species:   Clros
pid:       PID2224
parent:    cro-mir-18
paralog:   
locus:     CADEHS020000003.2:1621040-1621076
matures:   ['UCUUCCGUAGUAUAGUG', 'CUCUUGCUGGGUUAGGAA']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000003.2:1621040-1621076

56350 out of bounds
3121 alignments
3121 proper strand
3100 stranded perfect matches

****************** ******************
ACUCUUGCUGGGUUAGGAAUUCUUCCGUAGUAUAGUG
(((..(((((.(..((.....))..).))))).))).
--------------------UCUUCCGUAGUAUAGUG l=17 a=375 c
-CUCUUGCUGGGUUAGGAA------------------ l=18 a=0 c*
---------------------CUUCCGUAGUAUAGUG l=16 a=2158 ma
-CUCUUGCUGGGUUAGGA------------------- l=17 a=0 ma*

------------------------CCGUAGUAUAG-- l=11 a=4 
------------------------CCGUAGUAUAGUG l=13 a=77 
------------------------CCGUAGUAUAGcG l=13 a=1 
-----------------------UCCGUAGUAUAG-- l=12 a=6 
-----------------------UCCGUAGUAUAGUG l=14 a=68 
----------------------UUCCGUAGUAUA--- l=12 a=1 
----------------------UUCCGUAGUAUAG-- l=13 a=18 
----------------------UUCCGUAGUAUAGUG l=15 a=27 
---------------------CUUCCGUAGUAUA--- l=13 a=7 
---------------------CUUCCGUAGUAUAG-- l=14 a=203 
---------------------CUUCCGUAGUAUAGU- l=15 a=20 
---------------------CUUCCGUAGUAUAGUG l=16 a=2158 (ma)
---------------------CUUCCGUAGUAUAGcG l=16 a=1 
---------------------CUUaCGUAGUAUAGUG l=16 a=1 
---------------------CUUCCGUAGaAUAGUG l=16 a=2 
---------------------uUUCCGUAGUAUAGUG l=16 a=1 
---------------------CUaCCGUAGUAUAGUG l=16 a=2 
---------------------CUUCCGUAGUAaAGUG l=16 a=2 
---------------------CUUCCGUAGUAUAGUa l=16 a=2 
---------------------CUUCCaUAGUAUAGUG l=16 a=1 
---------------------CUUCCGaAGUAUAGUG l=16 a=1 
---------------------CUUCCGcAGUAUAGUG l=16 a=1 
---------------------CUUCCGUAuUAUAGUG l=16 a=1 
--------------------UCUUCCGUAGU------ l=11 a=8 
--------------------UCUUCCGUAGUAU---- l=13 a=3 
--------------------UCUUCCGUAGUAUA--- l=14 a=12 
--------------------UCUUCCGUAGUAUAG-- l=15 a=84 
--------------------UCUUCCGUAGUAUAGU- l=16 a=2 
--------------------UCUUCCGUAGUAUAGUG l=17 a=375 (c)
--------------------UCUUCCGUAGUAcAGUG l=17 a=1 
-------------------cUCUUCCGUAGUAUAG-- l=16 a=1 
-----UGCUGGGUUAGGA------------------- l=13 a=2 
-----UGCUGGGUUAGGAA------------------ l=14 a=1 
----UUGCUGGGUUAG--------------------- l=12 a=1 
---CUUGCUGGGUUAGG-------------------- l=14 a=2 
--UCUUGCUGGGUUAGG-------------------- l=15 a=1 
--UCUUGCUGGGUUAGGAAU----------------- l=18 a=1 
--UCUUGCUGGGUUAGGAAUa---------------- l=19 a=1 
ACUCUUGCUGG-------------------------- l=11 a=1 
ACUCUUGCUGGG------------------------- l=12 a=4 
ACUCUUGCUGGGU------------------------ l=13 a=1 
ACUCUUGCUGGGUUA---------------------- l=15 a=1 
ACUCUUGCUGGGUUAGG-------------------- l=17 a=8 
ACUCUUGCUGGGUUAGGA------------------- l=18 a=1 
ACUCUUGCUGGGUUAGGAA------------------ l=19 a=1 
ACUCUUGCUGGGUUAGGAAU----------------- l=20 a=2 
ACUCUUGCUGGGUUAGGAAUg---------------- l=21 a=2 

mb-01110
ax-1001101
ku-11
ss-101011101110
fn-111
